NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1000018

Scaffold Ga0181391_1000018


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1000018 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39620
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (93.55%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011124Metagenome / Metatranscriptome295Y
F016061Metagenome250Y
F026258Metagenome / Metatranscriptome198Y
F028350Metagenome / Metatranscriptome192Y
F042075Metagenome159Y
F079995Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100001849F011124AGGAGMFDPDKSYTVLVWDMPVSVWDDDADDYIRNEDGSIKLFSLPNYDYSYICDGIDVDDLHERDEGGSYT
Ga0181391_100001851F016061AGGAGMFVKVKAINILNAVTGAKPTIDRKNVRSFNHMGKYYVGQSASGKFLQVNDGKHIRYYGNPFWNLYRVVSKNGNDYVIHEAK
Ga0181391_100001853F028350AGGMIYRSGKVNPIAKALLQTNRRRPQVVPDKTKYNRKKENDNANKGRSNEKSEG
Ga0181391_100001854F079995GGAGMKHFISHWELQPDTQNTWASVNCANGRAEVIKHMGCWMLEIRFDSGKAHVSSHNTRDEAMRQAEYQAVWTTTFA
Ga0181391_100001855F026258AGGAGMKERQLNMFGMPKEWLDELMDDWRDPMMGGLQMLAMSMLSDAQERIALGDGNTARQYINRAKYVIRQTREQ
Ga0181391_100001859F042075AGGMVIHQFTTSEPNPSFAEMRMSSYNDYCFDCDCEGIKPIIWGDFKRLVGELIAVRKYTEAAACMYAQKLAFDRYHSN
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