Scaffold Ga0181403_1010939

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1010939
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F002318	Metagenome / Metatranscriptome	571	Y
F026711	Metagenome	197	Y
F058445	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10109393	F026711	AGGGGG	MNKRISQYDAEMVADWFNGSNLVHSSIADNKQIKELFEQSEKLRQKAHKIIVDDATWKFEFKRGNQRKLKVKYNYEKGEKXSV
Ga0181403_10109394	F002318	AGGAGG	MKAKDYKSITNILESQNKGKKFYDFMDMEDVKYRIKEDIVPLPKQYFNNIVKLIKGEKXIKE
Ga0181403_10109396	F000993	AGGA	MTKLHHTEYKKNYKNYILSTIEEDGEGNPLTTESKKIDYIFDRFNSEYGFMIERVGKYKAMSEWLSGLALDIEYYNDAIVDLAIKMGSINPNPNDKLKNTVAANYWDFMANIIIGFEPKKQAA
Ga0181403_10109397	F058445	AGGA	MSNVYDDLGNLKNNCLTVTPTSKPRNIRGLRSDANWSIEAINHDIKNNINHNVNCVFWTKKEALSFLKTGVHNCSVTNQPLYQIKKGNKKHD