Scaffold Ga0181403_1008237

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1008237
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2256
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F007750	Metagenome	345	Y
F009559	Metagenome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10082372	F007750	AGGAGG	LAFLGDFGKFFGLGSSEEVLGDLGAAIGGSVAGPAGEKSGRFYGESLGRATNNLDGDNISPASTADQALEQSAVSVSQRGDVPQETSTMTGTRGMTTQAGFGALAPLFGTASRFLGSKSGQIVTGVGTAVGLGSTQFMGMPGKEKPVLTQSRRNKAKVRQLVNFMGIEGTANFLSQSMNVRVTPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMARTTRRASPVRRGSSTTLIKN
Ga0181403_10082373	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSSTSDTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTGATRTIRCGIFIG
Ga0181403_10082375	F009559	N/A	MNQVLLYAGLILASVSFFLCVYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSI