Scaffold Ga0181403

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1004748 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2980
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2980

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019327	Metagenome / Metatranscriptome	230	Y
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10047482	F032309	GAG	MRNETQEFFNYTQSLPFKDITHFWDIPHKEMLDEIKTVDEDYWRRPFDADNDQVNRMKLDDEQSVNHYPGLTGDLIEAHGWKSLCFLNETGNSKDQINRFPAVFNTAGDYKATLKYFLDNRKWTNVAEFSPTLVKFFKEVINKYMHVGQIFVTRLEGGGVITEHNDVPEDTKHLLGGEQVHMFDMLNTFNLCLNHVESCYGVFDNKIIPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKDFRRLVMENK
Ga0181403_10047483	F033761	GGAG	MTIINNHTTMKLDDTFQENHTELFTFFENQGLDVELHHDFAGLRTLLLSKGDDDYPYDFDPAFETEINNATGFCLYLKLGDDVVATYAAKKLMYATFIEGMKAKFDGTYENPDLGTTLEEAYSSCQWVSKDHRGKKWGRALDHLKKDVVFDIMKCDLNYAIHKEAYTDYHTTHLAYEVSEKLALIPNGDVGGAGEAIDKIYNITYINSTQWTNKQSDIKALYS
Ga0181403_10047484	F019327	GGA	VTLKHYTLRPTELDSKHISQIHKIINQVIEKKTDEYWKNYEDYSVYKQTAITIGLIDEDVKTFSSIYNREFYGDNVYRLFNRFLVSDDIRETGGSKTYGGEHRFFEMVHQQIEYVKSLNPSFYFMSRQRKNTKWLRWYFDRFNKQYGTDLIVSDKQYMVCNGSEYDCSQTLIYPKDKIVPFKSYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181403_1004748

Overview

Ecosystem & Geography

Associated Families

Sequences