Scaffold Ga0181403_1004002

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1004002
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3264
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F008877	Metagenome	326	Y
F052889	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10040025	F008386	GAGG	MSSEKQLILIILVAVVVFGYQYYKDEKKKQHDDKLQRHLSKYFDRK
Ga0181403_10040027	F008877	GAGG	MKAKYFVSVLKILKDKYGFSFNINDTMQQAQDKIDNVNTFKYISKTNGSHLLPGNVINFLKERDQKKKGDK
Ga0181403_10040028	F052889	GGAGG	MRDKTDHIYSTALAYACYKSGPKKVNDNLLKNMFHDLCLLSKEYAFDYEQELKNILKEGINES