NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1003945

Scaffold Ga0181403_1003945


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1003945 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3283
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020895Metagenome / Metatranscriptome221N
F046082Metagenome / Metatranscriptome152N
F097361Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10039455F097361N/AMLYLLFTPFAGYFAMLITIVIMHSVGYDVRGVDTFTIWCIYIQIYIYLFVITKLKGKSDE
Ga0181403_10039458F020895N/AMPTIKTYEIVLEIDGQESCITLDDTFPAIDSWASACSMAVLMAKHIHPDKEVEFVSCAEYEADEYADIGYVYDAPVVLQ
Ga0181403_10039459F046082AGGAGMAANIKLTERMLNKSEINANKTVKQFLLDDFGMQYTDPFFTVGNKLTVVGEYIDGEEADINFFRRSGRGDTMLSIQKLKQYADAGNEVRLISDSESDGDGTRIFISVYSTGSETDAA

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