Scaffold Ga0181403_1001544

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1001544
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5445
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y
F019967	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100154411	F002495	AGGAGG	MSTNGNAKQKDWVLFPYKADDERAINISFSGNVVLDNGNKGTILGVKGVSKDGKSKFVRVFAQVGVVFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEYKPKQAKTQSKEIP
Ga0181403_100154414	F003365	N/A	MSIKNTMKTIGKEWAKKNEGGMFTADHLSPSQLNKNIDQWFNDYCVLTAEQRKALMSNLKMDFGGYVGQALQDIIVYDLTIDEVMKGKK
Ga0181403_100154415	F019967	AGGAG	MKKVKLQSNEIELALNVAAKRFIGNIKMGKGFSYGYQGDYKKQLGDSFLGALGEVAYAKSTNSFYNGSYTDNLERYNDSDFQNNIEIRTQERKDYNFLLIRPGEKKGKYILVIHEGDYEFSILGWFPFINDMPERLTNFGYNNRPAVYKVDIKELYNINDL