Scaffold Ga0181403_1001069

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1001069
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6610
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (17.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010128	Metagenome / Metatranscriptome	308	Y
F050747	Metagenome	145	N
F074752	Metagenome	119	Y
F102065	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10010691	F102065	AGAAG	MNKKGNTKPIGYKLPYACSECGNSDIDELMIIADAPWVVECMQCGHPNDARWEYGLGYDI
Ga0181403_100106923	F010128	N/A	MARDNPTQPGGMRRFDELVAMRNVFGNDEVLLEEVIRNMSNRDANIVFRRVAKAFDVTNALNRELMTINQVM
Ga0181403_10010696	F050747	N/A	MSKKGKNLESMEFWKAIEQMDFNGRGSKAAGRWLVEDSGLSIEQLKEIRNVTNRKASYMMRLLNNVTGVGDDAFSDVCWQIIANGQEAYKNATVESTQEMIDNNEYTESFAYAFHEVDDAIEEAKQLSERNKQLERIEQIRKTGGGFDQKLVAAFEHADNGNKGKLALVFPELFGHLVD
Ga0181403_10010699	F074752	N/A	MVVIEQETTSINFDQEGDAYFMAGELTYYLNEFMKSESEFDAVAGIANTGGIGIKVDEANEEVEYTFFTISP