Scaffold Ga0181403_1000880

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1000880
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7287
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F057678	Metagenome / Metatranscriptome	136	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100088010	F057678	AGG	MVEYEVNDKVVFRFNDVNEVAVVTNVRRHKNAITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRQNFTKDMILVLDGEAGGGVQHLERHNDLIFPTQGPRSF
Ga0181403_100088014	F005364	N/A	MKRLDLKNKLKTIVKEEVSALLAERNYKYGGLLDPNDFDPIDPEVHVIGFGTMARSALRQDIVRRLQGALKTAKDAATGGSNSYDKFKSLEGVLEPNGVLQQQLKAESEISDQLEKLRSQGGRRAIPIPKQN
Ga0181403_100088017	F007609	N/A	MITLENISTGEVFNGEELEFFVDDDTLIGEVFLDGDLIFQSLDVLDDDQLEHALKLEFKMIEEEKDIFSSFNY
Ga0181403_10008807	F105900	N/A	MGRVNNAFAYDKKRAKRMGKLYNTIDFNVNDKISADLFAKVPEKPIVGELEIGGKSFKVTYQELDAMMATLQEAKRTVESKYRLGLMNR