NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1000610

Scaffold Ga0181403_1000610


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1000610 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8736
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009527Metagenome / Metatranscriptome316Y
F054789Metagenome / Metatranscriptome139N
F090175Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_100061018F054789AGAAGGMNREQQRKFDRIAASRLSRIKGGIPKHIALSNSRSITLRNKLNRLGLEGPHITAALEMVDAMGLQEVMSKQPLGSRFASMPQSKRKSKVWSSKKEPGS
Ga0181403_100061019F009527GGAGGMNRNTFPPSIVNLLLQEGQRWRVHGETREALGTGIIPVVASARGGKTSLAYAFIEYVIKYTKRPVILDSFPQKVIDEGIPEHWQGRVSNTSFNDIAEVDEPAVWLLDDSATHFNSRSAMSSANQTLAKAAGVLSHFGGGMTVIFTTQSMSGIDLSLLRYTTISPVIRWVDKDLIAQERKEWRSEVEHGQYELRAVCKDPRLRDFFWSAKDSCLVKAPYPEFLKKENDPIKADLLSRPMRYHSVEDKKIMLGIMKPPAKQRAKRKKVSVDE
Ga0181403_100061020F090175N/ALFLGLMAGALYFLVGKVPTWFFIAIGSSLIFIPFMIERAKEDAELILVTDGPHRLTEYRIGNKVDLEIEGNAVRFQSKSGVNRYILSSIDVDAKKALGTEFAGFSQIDQVRDLTTLDRMVEMLQSTLKESRVSAQTVGVEVEKQSIEIVDWALKTIYGAIIPTEISEAFGVIEEQVQLDPNETLEELAEDFE
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