Scaffold Ga0181403

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1000607 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8764
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (58.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8764

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (58.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042011	Metagenome	159	Y
F057750	Metagenome / Metatranscriptome	136	N
F061354	Metagenome	132	Y
F083272	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100060711	F061354	GGA	MKVMIWITQTNVELLERGEIIQYWLREPANALDVVQVQISYDDFIRLRDNQPEHYITRDHMRFINYSGMHRDYMDDMPIANDEGYGVED
Ga0181403_10006072	F083272	AGG	MKKSQIHKIIREEFVNILREETLITEVFQDPIARMLAKDRSLDNNWFKFFGAMARSFDIAWDKVPAGSFQKVSPGSPLTKKGLAIYYIKDDVENPFASTDRYGYSRDAKIYGPAVLAATINNKIAYQNDRGDSARIGGKLRRSEPIGKAIRGTMQVNKLKQIADEVYVFDLESYRGGTTALKSARAQLKMGKDKFTNHKAWKKANLDRYEDILRSRVGGRDEVDRMVAEIVKIANQAVTDAVTGVLKQDRYGDIMTTVAGQEVMLKDITQSMDNAIKDYQRYIQYENEEAGELKRGVDRGVKSYYGEKKKEYAMELKRYLKGFKTGKIKRY
Ga0181403_10006076	F057750	N/A	MRKDQYLFETTREKAVAKAQAIVDQYVPGKVRVYVEYCDTEFAWYMIGEYQSYVEYGGKVKTVTSIKTEKMDRYYDADLFAHFFKQRAAYMNANYYWQIQARENNIHPAMFKEWFDSKKRTTSDMVSA
Ga0181403_10006077	F042011	AGAAG	MKRKQQYEASARIAMIALIGIVLSLTIMIAIGKHEPVTQKAVAQEPILWTPTPLEQRKMDSLYSIDAVTKADMDSIMDLIDAILIKLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181403_1000607

Overview

Ecosystem & Geography

Associated Families

Sequences