Scaffold Ga0181403_1000210

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1000210
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14131
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009993	Metagenome / Metatranscriptome	310	Y
F012718	Metagenome	278	Y
F013946	Metagenome	267	Y
F046648	Metagenome / Metatranscriptome	151	Y
F050398	Metagenome / Metatranscriptome	145	N
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100021012	F009993	N/A	MPRLLKYTTQGIIDDVPDQALAVIEHATLFYLVDQRFKGMNKFVAFAVAGAGYEIFIDSIKNSSTTAGFSLDKK
Ga0181403_100021015	F050398	N/A	MPILNFSIRSQDVNNAKTAGFTSTEQAKKTIKLEQHLKLRYLKLLHIYHNIDNSSITDGEGTSNNTIIFCKISFLNGKNSVFFEFNNGQTIEHAGMICLGETVKNDGDSVFKDLYKVLHDGKQLLYINQPFEVSLFKLIAKEPTAGNSSVDTYNATGSHLIEPMTIQEFRGGVGSPGHYVSLTFEYQEDEKK
Ga0181403_10002105	F012718	N/A	MDTKLLQFDLSDIPDNPSIVLAGRRRAGKGVLCRDLCYNFFRGKIKNCFLFSPTAEIASNGFDFVPFEFRYNEVEVEVIERIMKRQEYLIRNDPRGDFRTLIIIDDIIATNDNKQQKILDKLFICARHYQISLIVCYQYIKKDFSPVQRDNVDIIFCFQQSNFDNKDALNKQYLSVNDNKKQGLDLINKYAVGFQTLTILNTTNSDKYEDFCFYYEADMINKKFKLGSDYE
Ga0181403_10002106	F013946	N/A	MSMPNAQSVIDSMLRGVMISAVNRAVFERKPVFSMGTVNQGVRLGAASLGYDVVVKPAVKQVFPTLPLPNGN
Ga0181403_10002107	F074141	N/A	MTEEMTDFKDKHYANKNKQLCSYCSYRCAIPSKNYQYCSEICRLLHLSITKQLDIEDIANLIKLSKVDLIHIILTLKCQGISLEGVHKILNKPYDYKQKILKVNHEGGFVNFD
Ga0181403_10002108	F046648	N/A	MVLLTFSFTGENTTGQATFALTQEYKFKNLYLKDIKYNIVNEKLEEIIAKATSGAGLGSIDTTITSPLGVHMDFLDSNDCVLYSLDDGSTPPGGGGEPSLNDATNITGLIPFGSAGKTSTNVSDNATISHSYPYHLIKNRPQTWASGKSLVFTLYYRDVQTDGLIKNWAVMSGTTDAFSDICSIDITLQLE
Ga0181403_10002109	F059991	N/A	MSNPQLIHRANENSSLYSTIKARNSKQNVFDYVNEGELNVCAYAKSRVIVNPTTSLNSDGGQTIKYELPNFGLLEDVYLQTEFARGDTNADTGAKDCFLVDMAGAFTFSKIRIVYGGNTIFETTPEHLVVSLYGRASREESLVLDGMLGSAVVGLSGDDTHGNLEGRAAMASSFGGQKLSCPLKCWFSESLGRNFDLYSLSQKCFLEVDYRPILDVHGKAETPADRITYAGSNLVCFLNELSPQEIASYQSRNYAPGTVSSQLAYTTTMLSDTIASPVLITATTKGNTVKINSISGLVRRMYIFATLDSDRASSTAKAYMKLVDISSYKLSANNQTIYEVQDSGVGIDNLNRASGNGYQSDQFIEMFHNKLIGPCNSAVASDTYKLMDVAQNKSLGNTTGDEFGFDKVKVINFGKNPNDFSSADGSLALSQVNVPELEVKFPTGTTGSHTLHVVAEIITLNTYNTSATGQINFKSISE