Scaffold Ga0181403_1000042

Overview

Basic Information

• Taxon OID: 3300017710
• Scaffold ID: Ga0181403_1000042
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29605
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F025153	Metagenome / Metatranscriptome	203	N
F047319	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100004219	F047319	N/A	MYNQGETVIVTEYINKKANEVKHSVGVIMRPFIHKKQTFYDVLLERRTGLSFLNTAKSSKQSFINRELTTKLIDSNSIETTIPFKAMLEFEELPIMIA
Ga0181403_10000422	F015933	N/A	MKIKENIEAGMYFKFKKTFRSYTEDVYNIETSKDGFMTLHRHHIHSKTGEYIPTDLVVVRRIGENSLDYYKHDMFGKKTRGRIHYDSIDSFFYIKQDVEGKDYTHIEKAA
Ga0181403_10000427	F025153	N/A	LIKLKDILIEQIGFQIPGTPKQKNIGRKTRQEFAKFFNNFEAGNTKTAISGYAEQIMNSDAPDEVKQNASEILNEMEKVAIDIQDELHTRQISDDEVAETIFDYVNSEMDASDSIEFEQLLWYDNQIDSSINSGMIENAVAILDQLLHQLEFIRGFILQEFPKISPAGFKR