NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1010839

Scaffold Ga0181387_1010839


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1010839 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1763
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007226Metagenome / Metatranscriptome355Y
F036692Metagenome169Y
F095622Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10108392F007226GAGGMQKLLNKITYYFLQRAFTQMEQSGDLQNADSVAEHLEDYYTTHVK
Ga0181387_10108393F095622N/AVHFLVAFNKKVCYNYNTIQQQLTHEGNMQYNTTHVQLAKTFLANKNVEVYTNDERTEFSICVDVHNNRIWTDGERGLWSTVAKGVKVRHANFLVTKFDDDEEWSGGLAGTVHYDGSGEDGTWYDGGDVETALINKTKDMRESDGMIYTDTAFLVNLQKYMVDSCDFDLQLCEYLDFDYSEQGMQDDENVNLDVEMDGDFWLYVIAEMKAEGIAHRHIGVADLIVEAVA
Ga0181387_10108394F036692GGAGGMQNVHVLQLQGTGDDEYAFENAGVFTTKLLALDKLAKINAEYEDADMCVFTLMDGTARIEEHTIDA

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