NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1006396

Scaffold Ga0181387_1006396


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1006396 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011860Metagenome / Metatranscriptome286Y
F015999Metagenome / Metatranscriptome250Y
F085545Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10063962F085545N/AMVNIDNLVNEWAYRCKKGYPDMDSPSDLRVLKTILKEEGITIPQFQQVISEQEKSDELTIKDIEDILNQIKDDKAAIKKIYNFISNRPGEKGFFGIADNSNVTDKTVDTSNAPQVIFDLLSNSGDLKKYIDFNKPGFGEIGKEGNFLDFFEGKSGITKDTLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMAAAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLAKKYDKSDKRLTTLITNLSDEDGLDKKELLDAVIDFESKAHPKGDAGKYFTEDILDNPIELRKSFTKNLIKNYSTSKNIDHFIWWNSDDIFGKYLSFKPEEADDLVDNGSLRTNNIFVYQLDPSISKP
Ga0181387_10063964F015999N/AMSLNSFFDSIDTDTQFDVWRDSIKQKLIHLKNTIPLENRLELHYVGETLEFLDSLNVLSSDFLAHNPEAQSKTHFKERLRVCNSYYKKFGKR
Ga0181387_10063965F011860N/AMAKYKRQMNVAMERLDQGLARVHSLIKRGKNADAIHYMDNNLKELYGELQNIINVEPDNENPRVRGL
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Institute for Fundamental Biomedical Research
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