Scaffold Ga0181387

Basic Information
Taxon OID	3300017709 Open in IMG/M
Scaffold ID	Ga0181387_1000720 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7199
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

7199

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181387_10007202	F088821	GGA	MIDSSKLYSVPKDVVEDIVMKESRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIAQSTIESNDEYKERLSRMKLFPLEQKFFSAQQRIYDENNVNRSYPQNKDFWMYKESNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGEGNPVTDTDGNVVPYNFVVRPHEIWNFEVKQGILTLLVTRQMYYDIHNIKKHKWTAYTPEYICVYTEENGIKKKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYSLKGMYLAASELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDEQQIPNNMLYQADMQGLQHLRDVIFGDLMSLIFLMAQVRDKSIVKSNVSGSSKRFDNVDEQGLLASTAMDMEMVEMQVLKRMAKVRDEDPMDYNVTYSKHYDLSSAAEIFSDITEGMQYHVLPLPLLKKLTGEYMRKRSMPQEDIQSVMDHFDEFGIPRTSGDLKNLIDILPQEELQRQAELGIDLNSEQ
Ga0181387_10007206	F060872	N/A	MREPDKTWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTKKAYKHFDGYNHYPDGNLTAIDYDSGSPVWLCADFNRSPHCWALLQVKKARNGLKQYVVFDEIFSKEALTTEQALKAVELLKKWGISKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFDEHQISYKNELDIQNPRRKVRVDKINNVIYAGINGERRLLVNTRCDHVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGSNSPMYVLR
Ga0181387_10007208	F010211	N/A	VLFLMVGSVRCNVPCVSERMPQKSNWSDLLVNVVGHDPPTDSLELRNSFIENCLADQDGFKVSQADIHLTMQKGIYDWEQEALSKNARLNGLIRAPYNTGKSQQVPIGLSAYMTTRKHELETLIVSADGGISTKRILSLRALFMSDMYRYWCREHNFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181387_1000720

Overview

Ecosystem & Geography

Associated Families

Sequences