Scaffold Ga0181387_1000522

Overview

Basic Information

• Taxon OID: 3300017709
• Scaffold ID: Ga0181387_1000522
• Source Dataset Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8697
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F016882	Metagenome / Metatranscriptome	244	Y
F077944	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181387_100052210	F016882	N/A	MAYYVAKVKIATDTPKGVKWQSESYLVDALTVTHAEALVNEDFKDDGVEFEVKSVSKSQICKVIEPSTKNS
Ga0181387_100052219	F005364	GGA	MNKSDLHNRLKDLIKEEVESTLAEQSYRYGGILDPKDFDPIDPEIHIRGFGTMSRSSLRTEISTRIEGALKTAKEAAEGGPNSFDKFKSLEGVFEDKGVLMLQIKAEVEIAEQLESLRKKGGRRAQPIPKQF
Ga0181387_100052222	F007609	N/A	MKTIENISTGEVFEGSEIEYFIDDETQIGEVYIDGDLIFQSLDVIDDNQLEHAFRQEFKLLSEASDIFLDFNG
Ga0181387_10005228	F077944	GGA	MTLYFQRKVQDHFNMREEIKKERLKKRVLKDFPNAYVDHDGNGYKIMVGNKYIAEEYYLPNTHDLDKAWEYAALACKTTQNFNRSHPDRMDLSDKEGKYHRISKRKRRGRNVK