Scaffold Ga0181369_1105955

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1105955
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 582
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F027814	Metagenome	193	N
F056902	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_11059551	F056902	AGGA	MDKYLKWIATGFLMLGVGANSLAIYPLGPIATLAGGLCWLAVSIMWREAALITT
Ga0181369_11059552	F007119	GGA	MSKYQVIKDNKVLKEFDKPMDAAIFATNNEYGPGMSIVTNDKEATESWTHFDYKEKL
Ga0181369_11059553	F027814	N/A	FNDLPKILDWIKEPSHAGHLFIVEQTLKSVKEDQFKVGTKVKFGRANGMKRMGVVVKLGPKKAVVDCSGAKWRVPYDLMDLIDE