Scaffold Ga0181369_1030171

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1030171
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1280
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10301712	F005813	AGGAG	MKLYKNSEGVWAGTQADARKMCGKTYSTVDVPVDKPNLLKFLNLNQVGSYTSNDKQGTIAGEIDTSNKSAMSWIRWSHDCMCRGQYEDAKEMLRKGLELASDRTTTSDG
Ga0181369_10301713	F006217	GGAG	VIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0181369_10301714	F029123	AGGAG	MSYEVWFGKDGNWFGYHSFKNRMEAVACELKYLKIFRDLTVEIRRREHNAY
Ga0181369_10301715	F027536	AGGAGG	MRISKVVPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYELDKEEGILWVPNF