Scaffold Ga0181369_1018014

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1018014
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1739
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F022198	Metagenome	215	N
F030097	Metagenome	186	N
F044196	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10180145	F006684	N/A	MYKIIISYIIASAFALGLLNHAVNKAQDNIETLAEVLVHHSDALEDHRGVLLQMIDDLTVPYM
Ga0181369_10180146	F044196	N/A	MEDITDKLEHAKILINQMIGSHQGTPEAATRYAIDQLGLPQDVASSLIQYAKQVNKQ
Ga0181369_10180147	F030097	N/A	MRALDTAGTQTKVSSCMGFMASGAARDAYRRLLTANTVGESKGEQRKSPFSKTTKEKVKK
Ga0181369_10180148	F009110	GAG	MTESMITSAVRYMESLRDKVPPAGEDDIIVKHGTPHMRTLGIDPHEAVKAVDKLRAQGMTARDAYGQVGMTQSQYYKTKKGVTNRK
Ga0181369_10180149	F022198	AGGAG	MRTIQQYRKDHPQLSEEQVHSAYHITEICYPEFAVSGFTLIAPGRCLAIHENGNIAPLRLKESY