Scaffold Ga0181369_1014407

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1014407
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1980
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021014	Metagenome	221	Y
F040605	Metagenome / Metatranscriptome	161	Y
F045723	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10144073	F021014	AGGAG	MAYEIKDGEVAIVISPDLEEDGSWTGILKTGLIFGEEQHPLAMRNAMDYALTMAAASEVLEEYPELVEYFDDARHRILKEMFPKAYQDSLLAVEKENDYTTDGNVIKLTKWTKTLGEA
Ga0181369_10144075	F040605	GAG	MIRKFSVTYVMEVDEDNNFLSAHEESHREDVHDLVNNVMHDVDDIRIQNLVVKER
Ga0181369_10144077	F045723	GGAG	MNYCDMKGLIWPFLFCVFVICILPVLLVDNAKYCKQSIV