Scaffold Ga0181369_1013629

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1013629
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2044
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007611	Metagenome / Metatranscriptome	348	Y
F030052	Metagenome	186	Y
F058131	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10136294	F030052	N/A	MDNITDMNNKLQQLEDLLQVHDWYYAMSDDNYYYKLGRKQYEKIWKLMDELKEGGYFTESENLYDKYSK
Ga0181369_10136295	F058131	N/A	MRITIGQVGKTYEIGNDNKVKITHTHDAIVSVCGEYFKNKYTNEWLSELEVQDYYDAQKLDEENDNKYY
Ga0181369_10136296	F007611	N/A	MKRKTITVLDYSSARVFQYFVKINVHSEEFIQFKGHRLKDVEWMEHQISNVITN