Scaffold Ga0181369_1010337

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1010337
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2390
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F005019	Metagenome	415	Y
F040332	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10103371	F002586	AGGAG	MLKVKLEPNEVELALNIASKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGKYILIIKDNNEDFNFSIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELS
Ga0181369_10103374	F005019	GAG	MYGDVRQCIKCDMNADIVEKGKDYCASCWFKHFSGESIEEYEKRVKQLDQARKDKYEKK
Ga0181369_10103375	F040332	GGA	MDTNEDSMIYAAKILKGKVNRNSNSRVQITLSTDVAMEYLKNNPHLIDQFDKPFMYRPNLPDKLEFIDYLKSQTTIKELVSNTDIAKTKIEHWFRKDNCFSYPTIDDWNKIKPLLKDIKFDKELTYEVEKDWKEIE