NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1007089

Scaffold Ga0181369_1007089


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1007089 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2942
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003769Metagenome / Metatranscriptome469Y
F069439Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10070894F003769AGGGGGMQQLKTLTVKTSNKVKSVHMDTLYAVIENCYNSLQVIEADCTSASYFCASANIFAQLQYLYAENECNDYVSLESVMDVFANNVTYYDEEYSLYESVVQNTAMQKIKLQDYACLSN
Ga0181369_10070896F069439AGGAGMQKIQNTQFTISINNNFKNSIFLQTNAKNNLTYMCSSIEKVALCLQAHNLKNATVKFASNFLLNKNMLQTNLAHATYIRIANA

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