Scaffold Ga0181369_1007072

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1007072
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2946
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033258	Metagenome	178	N
F043150	Metagenome / Metatranscriptome	157	N
F100030	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10070722	F100030	GAGG	LTKEELDYHIATEQAFINKQRAAQERIRTQNIGVRSSSISADLAAFDMSVWKAEERIAEHEKKIEELENES
Ga0181369_10070726	F033258	GAGG	MTDNQIAKYLDQISKHCRAARANPNASTVHIDAIQALAVHVIETMKKERPDVTGAPV
Ga0181369_10070727	F043150	AGGAG	MVNTVSVNRRNSINMDNVDISLDNFRKAFEREPTQDEIAMMMKLKALNQERQINTSNTGNLMSRSKISQDIAIARANKALKEKVKCTPRGIQINKMLNYGLTAEQIMDVLQLNEVQVSATIERFKLPRPVTDLVFHQKVRN