Scaffold Ga0181369_1006749

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1006749
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3015
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073487	Metagenome / Metatranscriptome	120	N
F074828	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10067497	F073487	AGGAGG	MKVMGYDVTVEVDGVESVVQLDDTYPAIHDWHTATEFALQLADHMHPDANDISFVDCAEFELEEYKSYGYIHEAPCVLQ
Ga0181369_10067498	F074828	AGGAG	MEATIKLTKTMLDKSIIDANKTVQKFLDNDFGMNYDDPFFTTEFVDPDTGKTVRSAFFVVGEYADGAEVHVRFYRSATRGDKRISIQKLKQYAEAGDVVILTSDAESLHDGYRIHINIVRQADAA