Scaffold Ga0181369_1003854

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1003854
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4087
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003612	Metagenome	477	Y
F021862	Metagenome	217	Y
F028002	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10038544	F003612	AGGAG	MPTTPNNFQVTTAIGETDNYIGADISFFHITLKDNGASAVDVRTELGYDETVHNVIRAVLDRGTMVHQRIENASTGRIDIAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS
Ga0181369_10038545	F028002	AGGAGG	MDKIIKEIKKNKKAMIGVAVIVVIFAWMLVSGDTTPVDAQ
Ga0181369_10038547	F021862	GGAGG	MFARLRRWFGRYKKHILDSYDPPRPTVYVLGKKKYIKKKVLNRPKGLKGPNIK