Scaffold Ga0181369_1003762

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1003762
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4137
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F025153	Metagenome / Metatranscriptome	203	N
F093849	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10037621	F015933	N/A	KSYTDDVYKVETSPDSGYMALQRYHIHSKTGEYTFIDLVTVRRVGENSLDYYKYDMFGKKTRGRIHYNSIDSFFYVKDNKTKIEKAA
Ga0181369_10037623	F093849	AGGA	MKYIIIILSLLITAKSLSQDSIFRYEQRALTGKILHVDTHGIIYNNQNNYLKDIPIDFVYGYKRDGRVSILYQEKSGPLSAIHMHDYVMGRNLGYKHHYNSFPFAVGFFSSYLYTYRNTRGLTRNPKFSSLIFTAIPPTLFSYIRPKANPKWTYEKQEGYRRARSESNQKASFRGSILGTAIMYIFFFSRN
Ga0181369_10037629	F025153	N/A	MIKLKDILEQSIGFQVPGTPKQKNIGRKTRQEFAKFFNNFEAGNTKTAISNYAEQIMNSDAPDDIKKKVSEILNEMETVAIDIQDELHSRQISDDNVAETLFNYVNSEMDASDSIEFEQLLWYDNQIDMSINSGMIENAVAIMGQLLHQLEFIRGFILQEFPEISPAGFKR