Scaffold Ga0181369_1003149

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1003149
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4540
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004488	Metagenome / Metatranscriptome	436	Y
F004715	Metagenome / Metatranscriptome	427	Y
F018079	Metagenome / Metatranscriptome	237	N
F021539	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100314910	F021539	N/A	MNKKLEWLIIIFLLVILVGLSACSPTQHVDKQPQHETTEELNDKITKEMEAMDKEQAMKDNPEPANFEGIVDALGCMFAPDDCPLKQRNEEQKMDR
Ga0181369_10031493	F004715	AGGA	MIYTDQEHEWLSRPAKKKRVSNQTADGQAPQEDDDRLWQRCWGIQTTIEVDGKSYVVPIQ
Ga0181369_10031497	F018079	N/A	MYTLEKRKMIYIISRKPTWFHTHCLTPGKKLPLWYDPTWVIGECDLCAMSIRNQDWWNNCSYNQSQRKFYDIIEKELKVWI
Ga0181369_10031498	F004488	GGAGG	MFRHIRRWFETYKQSLFDSYEPPKPTVYKLGNKRYIKVKRLNTKANKGPYLK