Scaffold Ga0181369_1002994

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1002994
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4662
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F044802	Metagenome	154	Y
F075429	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100299413	F075429	N/A	KERLMTGTTELPETVTEFLEDGSVAVVVGHLRGWVSSAHLVEPKANQLMRKWLEEKSEALLNEDYDGAS
Ga0181369_10029944	F019754	N/A	MNHNTDDLMPCELGEWPPSEADIEEMFKAGEIDDYDRERALDELIAQELWRESLPCSVPSPQELNPGLK
Ga0181369_10029945	F044802	AGG	MTNDPTATALYRAREDLRMLKTCPTWYDHLDKVEAAMAEEDRIYDIRVAAGWELDEGGWCVPSPETGEMILEWDWLNFGLSYPEDANCCSN
Ga0181369_10029947	F023484	N/A	MERLRTTKHITNHICLMNINTKTGELLIATLGRYTSKTEKIIFFKTRAGSLVSSYYISTFNSIKEGDGLMLSNEWGRDQVLDAGQVAKCKTFIRNHS
Ga0181369_10029948	F022313	N/A	MTYHYKPEQEYELEKLERILKELQSVIEREKKRHMMDEHLSHSMRDLLEYEIIPLLEAEVYYDPTPQY