Scaffold Ga0181369_1002889

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1002889
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4744
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000497	Metagenome	1075	Y
F018451	Metagenome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10028891	F000497	N/A	MKNKSNEKIIENKISLSHREISQNKILFRLTNTKRDKSKSFLVYEKAKFSTNIELAYNNNYRKIDFDYDTTFNNRFKKVNLLVDFPQYINKSKKNLYLDLLESNKKYIAEN
Ga0181369_10028893	F018451	GAG	MAANKYIDVISPNPNAVLPKDYKFNKIQHSPKVLQIVDGMLGFEFNGTYIVDPTLDETGRFSVSPTTYYKISTKDKNRMIKHNIKI