Scaffold Ga0181369

Basic Information
Taxon OID	3300017708 Open in IMG/M
Scaffold ID	Ga0181369_1002842 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017708 Open in IMG/M

Scaffold ID

Ga0181369_1002842 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4775
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

4775

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (31.25%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-20.099

Long. (^o)

-70.892

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F027515	Metagenome / Metatranscriptome	194	Y
F030088	Metagenome	186	Y
F033798	Metagenome	176	Y
F049552	Metagenome / Metatranscriptome	146	Y
F054772	Metagenome / Metatranscriptome	139	Y
F057372	Metagenome / Metatranscriptome	136	Y
F069999	Metagenome	123	Y
F074752	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10028421	F069999	GGAG	MSLLNDLIPEVRERLEVDKEQYPFLYTFMMEDMQRAMIVKDLTVQTASQLISYAENAKVKFEYDDKSSFLVKLYNVFGR
Ga0181369_100284211	F030088	GGA	MGFKLNIITKTKMSAKDMSRTLITLNQSEVFNFYGKMYVPFSAMSVVFNSKGATKKFDKDLDVLVHPTRGRMFQIPKNVEQFITVV
Ga0181369_100284212	F033798	N/A	MILDRMMHNDPMRWQALFMDDETNILSLVAFRKWLAAEWYEKALLRDEFPEFEFMDDDMLVMEMQHEMLAVLN
Ga0181369_100284216	F054772	N/A	MRNVIHYTNEYFELLDTVLDLKIDEATRNKLATQIFKAIAAGEQIAYDGYDGGNV
Ga0181369_10028423	F057372	N/A	MMIGDMNKHELTNVLLEMVEQVGVASILEELVTAMSTDELEENVKHLDQHLFSNHFLTRE
Ga0181369_10028424	F049552	N/A	MEKKMFEFWDVISKMNFNGRGYERAGRWLVEDSGLTFSQIKEVRNMAQRKVNHLYKQFSDDVQIGSDDGFDDVLWQTVANGHEAFHNCTAKSLTEMYNENRYTESFAYSFHAVDNIEDEQFAANKFLKRERAMKHIEEMRRFGGGFDQKLLAAFEHASINNKRKLALGFPELFEHLVD
Ga0181369_10028426	F027515	GAG	MTDMTKFYEAMAMITSLPKDLQDRFISEVKEQQRQDVINELNIGTIVKINHKKISPADQFRITKINRKNVKCQKLNSSVVYTVTPSLLEVIS
Ga0181369_10028427	F015092	AGAAG	MLDKIKSKLLTKLFIEWVNDEFDVELLEASKVMIQQRQDAVNTLSDQANPSTPIGFRY
Ga0181369_10028429	F074752	N/A	MGKTETTSISFDQEGDAYFMVGDLAYYLNEFMETEGDYDGVTSITNTGGIGINIDEVNEEVEYTFFTI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181369_1002842

Overview

Ecosystem & Geography

Associated Families

Sequences