Scaffold Ga0181369_1002140

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1002140
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5515
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002833	Metagenome	527	Y
F007537	Metagenome / Metatranscriptome	349	Y
F017556	Metagenome / Metatranscriptome	240	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100214012	F017556	N/A	MAYSKFKTGQVVSFPSGGTIGTRSRKGGKITKVEKMYELKDENKRYYPNGVCRGELTTIKELSNGKFKGYAYRTNTIQPPGFYGEIVMVEEYKLKLSTEKEVINSYNGY
Ga0181369_100214013	F007537	GGA	MKKLLYLMVIGVIFTSCQKEEFEIETNYQFEMTGRTSQDINGYYRLSLNPQEDKQTLHRFGAYVTNVDKWNLPTKILWKSDAFWYLQDTIGYTYIEIGNVPTGESVWSWENFAVTGFEGMTVPIVNGTSHADPVVDSAYCMMAPIGAMVGDTVTIYGQAWFEEGDIIKYDSINIIFE
Ga0181369_10021404	F002833	N/A	MNINESNKQRIHDVLITDLQRRIFKQYNERTSEFLQTDEDYDTTQSLLVNRVLHLETLNDVNDVLIEYGDLFPNEQVFTLEGTMNYIFKLLR