Scaffold Ga0181369_1001963

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1001963
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5777
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F027515	Metagenome / Metatranscriptome	194	Y
F057372	Metagenome / Metatranscriptome	136	Y
F069999	Metagenome	123	Y
F071136	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100196314	F027515	GAG	MTDMSKFYEAMAMVNSLPKDLQSRFISEVKNQQRQDVFNELNVGTIVKINHKRMSPMDRFRVTKINRKNVKCQKLNSNDDSPLPAVYTVSMSLLEVIS
Ga0181369_100196316	F015092	N/A	MLGKIKAKLLTKLFIEWVNDEFDVETLEASKLMIQNRQDTVNTLADKANPPRPIGFTIGN
Ga0181369_10019634	F071136	N/A	MVFSTDRFITEIGNQLNQITTDFIGDMADDANIVARHLIDETDNEKALVHMNEISTLAEMCTNMKHDCKALESAFEAMFRREHGSGKEAATGLDAMRIITEISNDIDKIAPHISWLFEDDDCNIIQNIYNSSFFAPAEGQPV
Ga0181369_10019636	F069999	N/A	MSVLNDLIPEVKELLEADKEKFPNLHKNIVNDLQNAFVTTDLKVATANALIGYAEAAGVKFESNNFVLKLYEIFGR
Ga0181369_10019639	F057372	N/A	MSRAELYDVLEEMVEHTSINIIFSELCQAMTTDELHANIKHLDQHLFANHFLTRET