Scaffold Ga0181369_1001229

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1001229
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7291
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F068778	Metagenome	124	N
F093693	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100122911	F022875	N/A	MNLTDDIQDKIRVRAKQHINSTDPCPDHWDSIETPDGFVDFNIWQDDDYKNGEWIVTCYDTYCSTDDGCVHTDTSTFKRLAL
Ga0181369_100122912	F009459	N/A	MSREITLEPSVMIEELMFYIHQEEMGGDCIDPDNRFFPLYLELQKLLDKLNNERHDLYVSVKNDETNTAS
Ga0181369_10012298	F093693	GGA	MNKNLKTEWQLNYDKGDAWGSCMGWLFAVCDYLTFQTDECVPDEWQFRPSPFGANEDDYTYQTLKELDVPSEDVLHFGSLLVRFSELLKRKGLDY
Ga0181369_10012299	F068778	AGGA	MTYLLGNKEIVDWGVFAEVQDSTDQDLTHQVELVLPEEIQLQIHDLITNNIDKTKAIDAMAQF