Scaffold Ga0181369_1001007

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1001007
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8016
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (41.18%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y
F017558	Metagenome / Metatranscriptome	240	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100100716	F017558	N/A	MFFIIFKNKNNILTSYSNQIFSTEAEATDYAKRSLKKKDVWQVVRYDTENYNKYWYKT
Ga0181369_10010072	F004990	GGA	MYGDPKKKCCFCKKGADLKEGNKYYCCDHYSLYVLGKPMNQIEKELNDPITK
Ga0181369_10010074	F008915	N/A	MGFIVDNEITLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEFHANVGGVPDLIFKDLRLQVRTQLPKDNNKNSLIIRPKAKQGELYILIIDEAPKFKILGFVNSTFVLGQEQWKTTFGLNRPFCYSIPPEKLTPIELLKNGTWN
Ga0181369_10010075	F059875	N/A	MTVLILIFGVITNDGQLDLVKVPNSELKNINSCEIAIEKNLKWVDNPNFEQNSLPHGFYTYKNRVVMLQYCTENGVYSG
Ga0181369_10010076	F046315	N/A	MNHLMNKKFMEYSVNSSYNSKFVESYMKRNDLLPKEFRFRRSALDLLLKQSNKKISDFVKDTYKPNEQKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNDFLQLDETVAPNFFVGEMVQIFCVGTLFGNGQIGMHKKNEKHKINIHPKYASFQAIESLVESKRGLMMLFKPSKNIDRNANNRTVICQDKKTKVHWFGFLEPKSNGRFDIIDKSQSTGKTIGNLAENIQISWSAEIKAAYYPTIYNT
Ga0181369_10010077	F026438	N/A	MANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKVADVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWQDEQEQVLWTPPVKTYWLMYIDLVSKTLLGDLKNKFGTATLTKTKGWTYTNVKCPERPFYSDVQQVSLYNKATGLKPFLSYASNCDRKLFTQENCEDLSPENLEKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE
Ga0181369_10010079	F015659	AGGA	MKQRTLKDAIQQFRQNIEDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKVVKDKTFENGHKVNYPKDEPIEDKKSIKQLADEWIEVLKKTATHSASVGKFEQNLNPLRQSYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK