Scaffold Ga0181369_1000729

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1000729
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9317
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F009110	Metagenome	323	N
F016148	Metagenome / Metatranscriptome	249	N
F022198	Metagenome	215	N
F030097	Metagenome	186	N
F044196	Metagenome	155	N
F054046	Metagenome	140	Y
F062252	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100072910	F062252	N/A	MKTIDTSDAIETIIQTRDFCGNESEALKDWEAENGTLSEHQRAQVWQGVKEEWKLWQLKANVQHALTDAERLQAFSDIENA
Ga0181369_100072913	F006684	N/A	MYKIIISYIIASAFALGLLNQALNKARGDIETLAEVLVHHTDTLEDHRGVLLQMIDDLTVPYM
Ga0181369_100072914	F044196	N/A	MEDITDKLENAKILINQMIGSHQGTPEAATRYAIDQLGLPPDVASSLIQYANQINKR
Ga0181369_100072915	F030097	N/A	MRALDTAGTQSKISSCMGFMASGAARDAYRRLLTASTVGQSKGEQRKSPFSRTTKEKVKK
Ga0181369_100072916	F009110	AGAAG	MIASAVRYMESIRDKVPPAGEEDIIVKPGTTHMRTLGIDPHEAVKAVDKLKATGLMVKDACEQVGMTRSQYYKTKKGITNRK
Ga0181369_100072917	F022198	AGGA	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIAPGKCLAIHENGNIFPLRLKESY
Ga0181369_100072923	F016148	N/A	MIIKTATYPYGPAKHLDGDTLVQRLQVVAGQQRFVDDYVGALCDGDEYWISERVPDKPKKRTGDQILAWLEESGIDPEFQYDVDMRCESVILYNKHGQSLVTYPYGTGCLREACEFVMDQQEREDS
Ga0181369_10007294	F054046	N/A	MKIEVTKEAAVKLIGNDEKTWRNYEQTELAETSFYHGHGVNIQVIHNYIGEITQYYITDINA