Scaffold Ga0181369_1000493

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1000493
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11186
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F004235	Metagenome / Metatranscriptome	447	Y
F010001	Metagenome / Metatranscriptome	310	Y
F035549	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100049311	F010001	GAG	MQDKESKSVIRKLEAQVGNLEVQNAEYQQIVKELSDKLKLYEHKYGTVYKPAR
Ga0181369_100049317	F035549	N/A	MTNSDNTFGTHNKLTKILSQPWDGSTALIDFADADAAKAHFFSDAGLAVFEECCTQLQWAVVDDKKLKYTMAFGTKGDPSIDPSNDWAGLYNSRITALADAGTLAKNGFSEEESSDHLF
Ga0181369_10004932	F004235	AGGAGG	MPISPNRTKDALIGEQQFIGKAITMIAVDWDVDADGSREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINDFTSLDGTVTGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA
Ga0181369_10004939	F000464	N/A	MKLNRQQKIRLYSHHDHDIDVEEEFWPIMGILLAIVGVWTGIVHFIDWATLDVIPWWAEPFTIAPFVFLLIMKEEYDSLNPLHWWPMFWGYNAKLPEEERITIRPLDVERIMQQHGGRLNVHIIDYEHIKFRRKKDAVIFGLRYF