Scaffold Ga0181369_1000249

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1000249
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15283
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F051868	Metagenome	143	Y
F065691	Metagenome	127	Y
F067202	Metagenome	126	Y
F090997	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100024910	F090997	GGAG	MRIRVLAEETTYLECFVDVPEEIVKQSKERLSKRYLNKAIHKWIDENCGELNYQEYDTDFDWYTWEEVGEE
Ga0181369_100024914	F065691	GAGG	LNIYIPEPITILLAVLSFLAGFLYRKYNDKEDIADAFDEGFEKGSKDVVKALSELTGRDIHIEMEREDMDR
Ga0181369_100024932	F051868	GAGG	MSKPTKKKTLEQEAQEFTQKEIPSRDVTTRDYFAGAALSGLLAASGKYIRSDEIVNQAFCYSCLMLDHKKTKDKSS
Ga0181369_10002495	F021206	N/A	MTLTLNQILLMDNALATRSIPSDIIKMAHAKRYSKSKQEWIKLGEQPLHYVLRILAKEGLEDAI
Ga0181369_10002496	F067202	AGGAGG	MQFKDVIIGAEDLECQTIDTVAEAISEHIIELGLATPETLTGFTWRLDVRMRIDDEI
Ga0181369_10002499	F049285	AGGAG	MKLIKVRVNRTIEYEVSVGVDNDHKYEQVRDYLQTIDWDREIGISPQNYKQISDYYDWIDWETEE