Scaffold Ga0181369

Basic Information
Taxon OID	3300017708 Open in IMG/M
Scaffold ID	Ga0181369_1000147 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017708 Open in IMG/M

Scaffold ID

Ga0181369_1000147 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19783
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (82.61%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

19783

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (82.61%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Subarctic Pacific Ocean

Coordinates

Lat. (^o)

-20.099

Long. (^o)

-70.892

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003364	Metagenome / Metatranscriptome	491	Y
F005178	Metagenome / Metatranscriptome	409	Y
F021206	Metagenome	220	Y
F051868	Metagenome	143	Y
F067202	Metagenome	126	Y
F070649	Metagenome	123	N
F081883	Metagenome	114	N
F089518	Metagenome	109	N
F092863	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100014716	F070649	AGGAG	MQPRDVPVHVRIRYEPTQKQKGRECRLYGKDFINMAEAARHWGITYAWATEQVKKGWNRDSFPPKARKNYK
Ga0181369_100014718	F005178	AGGAG	MYILVWMQLFSTQSVDHYQLGNYATLEECQIELSKAAKMVTHKSETVACLEVEVQQ
Ga0181369_10001472	F051868	GAG	MSKDNKKTLEQEAQEFTKSEIPTGEIPSRDYFAGAALSGLLASGKYMRSDEIVNQAFCYSCLMLDKKKTKDKSS
Ga0181369_100014725	F081883	GAGG	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGMTLNDLAWQQTSNTISTYKLDDEVELNFDGEDNLR
Ga0181369_100014726	F067202	GAGG	MKYKDIVIAAEDLECHTIDIVAEAIRDHIIDLGLATSETLTGFTWRLDVRMRMDNYDT
Ga0181369_100014727	F021206	GGA	MTTVTLNQILAMENVLATRKIPSDIEAMAKAKRYSESKQDWIILGDQPLHYVLRILAKEGLGDEV
Ga0181369_100014728	F089518	GGTGG	MNCIIFIKGKGGKCFAYHHTSNKKELDRLVKKYISMPGISIEVVKKG
Ga0181369_100014742	F003364	GGA	MLLCSSPAALSCEVMAKTEAAFTTEQACAEEALIVARYFQSKGYLAVPECVKIKIGVSL
Ga0181369_10001478	F092863	GGAG	LLFEVTIQLKLDPDANFIASDKNGAAVGLEDVLTDTIYDLDDVEIIEIEVKEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181369_1000147

Overview

Ecosystem & Geography

Associated Families

Sequences