Scaffold Ga0181369_1000063

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1000063
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27052
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (50.98%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F042879	Metagenome	157	Y
F060872	Metagenome / Metatranscriptome	132	N
F077249	Metagenome	117	N
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100006314	F088821	N/A	MIDLSKIYSVPKDVAEDIVMKETRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIEQSTIESDDEYTERLKRMKLFPLEQKFFAAQQRIYDENNVNRMFPENKDFWKYKSGNFDDAGCSITEFYRDKVMFVKEVLGFGAVVTDLMMDNEGEPVLDDSGNVVPYNFVLRPHEIFNFQVKQGVLTLLVTRQMYYDVQNIKKFKWTAYTPEYICVYTQENNMKQKVLEIDNPFGEVPATLLKGQTDANSSFVVGKPRRYSLKGMYLASSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDEQTIPNNMLYQADMQGLQHLRDVIFGDLMSLIFSMAMVRDKSLVKSNVSGAAKRFDNVDEQGLLASTAMDMEMIENQVLRRMARVRDEDFENYIVTYSKHYDLSSADEIFSDITEGMQYKAMPLPLLVKLTAEYMRKRSMPQEDIEEVTNYFKEYGMPKSSADLRNLLDILPQEELARQVQLGIESNSEQ
Ga0181369_100006319	F060872	N/A	MREPDKTWDIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPTKKAYKHFDGYNHYPDGNLTALDYDSDSPVWLCADFNRSPHCWALLQVKKARNGLKQYIIFDEIFSKEALTTEQALKAVELLKKWGISKVLLAGDNTSNQKSGNYGRVGKNDWDYVREVFDANEISYKNELDIQNPRRKVRVDKVNNIIYAGLNGERRLLVNTRCEYVVKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGSNSPMYVLR
Ga0181369_100006321	F010211	N/A	MAGSVRYNAPCASERMPQKSNWSDLLVNVVGHDPPADSLELRNSFIENCLADQDGRKVTQAQIHLAMQQGIYDWEQEALSKNARLNGLIRAPYNTGKSQQVPIGLSAYMTTRKHELETLIVSADGGISTKRILSLRALFMSDMYRYWCREHNFNPVEFDRTDTGSTQRIIVKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVCNDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYRVEEWNNLK
Ga0181369_100006340	F042879	GGGGG	MPMSAKAKGRRTIVKAIEFFKDKDMIVDEVELGGRFRKSKDLFSGLCTKCWKHDCEHILEDTFDGFDLVAMDGTNVWLIQVKTNKPPTQKSYIRFAKQFAGKYIRILAMTWYDRKGWVLHTFNKNGTVTKNDLRRKPNEKKDDT
Ga0181369_100006346	F077249	GAGG	MAIQGRKKIKPITIDNRTVPEAKLKKVKVVAMPKVERSRKKVLSRAKIIGIMDFTVYLINKRAVTMTWTWLKARLKEPSTYQGVTAIAGAIGVTVQPDMYESIAALMLAIIGVVQTIKKEKEEDKP