Scaffold Ga0181369_1000044

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1000044
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34462
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (67.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → Pelagibacter virus HTVC019P → Pelagibacter phage HTVC019P (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032672	Metagenome / Metatranscriptome	179	N
F054055	Metagenome / Metatranscriptome	140	N
F065805	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100004410	F032672	AGGCGG	MANIVVSNFINERWVDRLYQNFNKSVYLLKPDGKVDPCKVKKVKSKYYLTSTGKWFNSAGLRIDEPAGLDKRAELSKFKSEIEKDETDAKFQKLKQTIRGN
Ga0181369_100004413	F065805	AGGAG	MTDKEQIQHLIDKNNKLEAELIVLKTKATGWFEDIAEFRNTLMIRNSELNQYKNIKVDWELKKKIILFLQKTQSVEAYDAMTPNQIAHRAAHFIENILTSKLPPKLAIPLELQVTTREPD
Ga0181369_10000446	F054055	N/A	MSSSRAKQTKDVMKYNHTIQKILTKHHADKFKDAANKAAFLSNYAKETDKVKKIEMLREANRQGWI