Scaffold Ga0181369_1000003

Overview

Basic Information

• Taxon OID: 3300017708
• Scaffold ID: Ga0181369_1000003
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70626
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (20.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -20.099
  • Long. (^o): -70.892
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024316	Metagenome / Metatranscriptome	206	Y
F047638	Metagenome / Metatranscriptome	149	Y
F074832	Metagenome / Metatranscriptome	119	Y
F091886	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_100000336	F024316	AGGA	MKLSQIILEGPLEYDPDFNREIDKIQDQGGKYLGSGDYGSVYLLNGKAVKVTTDSVELDHAEKLSGKKTNNFVYIFNVERLNDKLGIITMEVMGEYKGEIPDEFIDKLEKEAQNHNIPPDELDIRPDNFMVHPKSGKLKMTDV
Ga0181369_10000037	F047638	AGG	MKILKLISEIQFSIYQAMVRIGHTEDITVQDIGEMLRAIPGVLTVGQVSHDSNNNTAIMKVKLLTTKPASEAFASFKNTSIKRIPQVKRIEVADKTIEKKK
Ga0181369_100000370	F074832	N/A	MTKEQFLNGTSFSLDGDYSNTTTYKYRADGARCGGLEREYRMYNDVNNILISDHLFNIEKVGSKMVHLYTFLLGRKIVDRIRFEDMIEFPEQVNS
Ga0181369_100000375	F091886	N/A	MKKSDIIKVLERNLKVLKDSNIPEKIPLYHTIDTGGYSDDCHQIYHFDMGFSYDEDEGILFLEYFGDENPGTNGVPGIGMYLDHDEFMEEVANMKKNS