Scaffold Ga0181363_1018590

Overview

Basic Information

• Taxon OID: 3300017707
• Scaffold ID: Ga0181363_1018590
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1376
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051794	Metagenome	143	N
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181363_10185906	F078660	AGAAGG	MKPVNFYEVMDHKGEVEWGGASVSEAITCFRRGLYRSILVSVWHVQSEDDFKLITDKIDVTALVLATITSEREKA
Ga0181363_10185907	F051794	GGAGG	MKTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKELLEQERLADESMAKTWLDVTGATSISSSLGVPTDRNNDTSRSEQADGDEQNEGNVGGEG