Scaffold Ga0181363_1003230

Overview

Basic Information

• Taxon OID: 3300017707
• Scaffold ID: Ga0181363_1003230
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3663
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042188	Metagenome / Metatranscriptome	158	Y
F080895	Metagenome	114	N
F096874	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181363_10032301	F080895	GGAG	MTLHSTEYDDDQHPPKRTPEWYACGSCGDDIHHERYALGYRLCMHCGNQAAISARQSWCVVQPYGKGPYML
Ga0181363_10032305	F096874	GGAG	MSRKLKYRNADDLLNNCTLVNGCFIWPDANMKSPLISPTSPLSRMLLTNSVPRILFTLCRHLPASTRLVKRCTSKFCVNPYHHSEAGDVLRQRKAMGERGLNPSGLLPRQEAIEHLLLALPAGVTLNTLKPHDPELIGALMLSASIAGFDGKGIPKSMTKTYDVPVATPDKPVLVIRKREDARAPVKPDDKEESIDDFFDMLERGFAARRNPTKGGMSA
Ga0181363_10032309	F042188	N/A	VLPSGQGYFCFIMTIPLLEFAMTKSSQAVATAVNSVVASAVAESVLMLHGKPASDWDSTIFQLGFDSCKAVTATELAERTLAQCQTALFDLVKGLPYIEFQYIRNQFIAGGVDSGKTAGASEQVWDKQIGAIVKSFGFERPKSESKDAVRKAEAEAKRRAEFAKLSDAELENKVDALIAEGTTKSRKEAVKVSAELDKRNKPVLDAEQVARKATVDKIVERVRELAKAKTADADAILTQVALLLG