Scaffold Ga0181363_1001152

Overview

Basic Information

• Taxon OID: 3300017707
• Scaffold ID: Ga0181363_1001152
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6458
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F058816	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181363_10011521	F058816	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAF
Ga0181363_100115214	F002227	N/A	MKLTIQSKTNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGQQILELIIEREQGDKLMQIGEPETLQ
Ga0181363_100115216	F001964	GGAGG	MSRNLFAPPKFKVQVSGAIGWSDLKQRVVRHETVEFRTRKEAEAAAKELNPGEYTQGRLRVVPVEMPEDYDVYPVTERTKANR
Ga0181363_10011523	F000922	AGG	MRIGKQAWEKAKALYFAGQSWDAIANDLQLNKATLTNKASIEGITKVKREAKAISPKKETSLESLSALVRSKLAADAASTLERIDSYDLDGIKDESVREQILGSVAKRSALVFGWSEQGEQASVSINLLGSMPDKFHVEQVVSEPSEK