Scaffold Ga0181363_1000736

Overview

Basic Information

• Taxon OID: 3300017707
• Scaffold ID: Ga0181363_1000736
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8486
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F011844	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181363_100073611	F011844	N/A	MGQVLGSLQNIEIDITNVGTTGFKNLVCLRTSSVNTTMDATTEQTNCGVLTSVAEPLMSLDFDAICEVSPSGAQISYEDLLTCVKNKTIVMVRVQNPTVTGSSEGTAYYHRFSGYITDLTWNQSTTEFINFSGTIQSTGALDVDPA
Ga0181363_100073612	F010155	N/A	MLDCSNNVRVIYVNALNGNLSYNGKDVPVYGQTPFDTTPQNYVVIGNINEVSDNTNHSFGNNVEVVIDIFSEQYRVNDLGVVDSIASQILNILIPDTQVDGFDDANFEVFPIGRSSSRYLPLQDGDNYVARKIITINNLVNQK
Ga0181363_10007369	F004112	N/A	MSAKHYFLMMSGYQEKKVDSYRQTRLLMFTMVRLMGDPKSAPKTPEALWELPGDEKEKPKDEEYREVFNRLTKWQKT