Scaffold Ga0181363_1000596

Overview

Basic Information

• Taxon OID: 3300017707
• Scaffold ID: Ga0181363_1000596
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9646
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.2382
  • Long. (^o): -86.2805
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F010159	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181363_100059610	F003659	N/A	MPTYSANDVLGRYLIAREDVPVYNLPNGTRIGEIKKGNSTAEVYSYVVRNGQVWWQFDYTIPGQTPGAYYVLQKDGRFSLSAAPGNVAVSPSTLPDVDVFPGTDGIKKYAVWGGLALAAILLLRK
Ga0181363_10005963	F006697	N/A	MANQVSKLAYVDSKLGVGLPGQQTTRVIYDSVNSVAGQQFYEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIMSSATSNLADHSNLNITVGNQVVVKDFDPSFNASNRGLAFDRLHSGFNSANNLELRLLTDIVIPPQVNFKATLQLGNALIAAGDDITIIFKGYGRIFSAGNSF
Ga0181363_10005965	F010159	N/A	MSWQIPTLIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGGFKRMRIVSGGDVNQINDTNIRWFETQQLSFYTGTDFYPFIHHCDVKTQVTPYRTNEIPPDAIVQLVYFVEEIDNSPIARQVYITSTNDVTITHGLILNSPRASANPIPITNRTPQGLTYGGSGQTINTQTNYGPGATPLQFMQPSPKDYQDFAFGLLPANADGQAFATPDVVNGLLDVTDFANGALGSAIRDSAALQYYLNLHYALYTETVPESRG