Scaffold Ga0181377_1039439

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1039439
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 941
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F016274	Metagenome	248	Y
F056530	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10394392	F016274	AGG	MRNKYGLPLIYDFNIALRDKRRLKNLEYMKWNCPKGWESLWSKKLDQLKKNINERKRQTL
Ga0181377_10394393	F006528	N/A	MKEKDKLLTKLNIERLAIQTFKNIIEGSRSINGVTWNRIKNLKRKEQIQCLRTLR
Ga0181377_10394394	F056530	AGGA	MSEDFKIEKNVPLIKDSRKGGKLTNPLYLIAKKMEIGDSIRFPLPEFTHANHVKRDEYTDDEWNNALKKEANFNYWSNAPKTLRRYLIELYGKGSVAERNLRNIPEEKTDESGVRVWRIK