Scaffold Ga0181377_1017423

Overview

Basic Information

• Taxon OID: 3300017706
• Scaffold ID: Ga0181377_1017423
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1608
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Subarctic Pacific Ocean
• Coordinates
  • Lat. (^o): -29.499
  • Long. (^o): -71.609
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F040339	Metagenome	162	Y
F092859	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10174233	F022314	AGG	MVKTREILKLGDLVRLVRHEPPEDPFHTFPTEEIDRMGVGLVVSMEELNSYKDIPQKEWIEYTVLWSGLGEQLKHLGFDLIKITGAEI
Ga0181377_10174234	F012625	GAG	MDPLHNKTINVGDLVKEHTKHSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKIIDGNAHPNYLQDYIQGKRW
Ga0181377_10174235	F092859	AGGAG	MSNNNTDTITISENSEDKDTTVNIPLEFTAKLGVPQELIEEGERALNRFKWTMFALVGGYIALNIYVAYLQVSS
Ga0181377_10174236	F040339	AGGAG	MSIKDNLDRDTYGDLMYRLGQMDAILEDLKGTISRFHEESRRIRQGHPPEIVRALDEVLGRIPAAQEAEE